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searching for Cytoscape 12 found (46 total)

alternate case: cytoscape

EsyN (257 words) [view diff] exact match in snippet view article find links to article

building and analysing molecular interaction networks. esyN is based on cytoscape.js and its aim is to make it easy for everybody to perform network analysis

BioPAX (510 words) [view diff] exact match in snippet view article find links to article

(project wiki) Cytoscape includes a BioPAX reader and other extensions, such as PathwayCommons plugin and CyPath2 app. BiNoM, a cytoscape plugin for network

Watts–Strogatz model (1,613 words) [view diff] exact match in snippet view article find links to article

Watts–Strogatz small-world model generated by igraph and visualized by Cytoscape 2.5. 100 nodes.

POLD1 (7,977 words) [view diff] exact match in snippet view article find links to article

Retrieved 2016-04-25. Ono K. "Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization". www.cytoscape.org. Retrieved 2016-04-25

Post-translational modification (3,189 words) [view diff] exact match in snippet view article find links to article

Huang CC, Babbitt PC, Ferrin TE (September 2007). "structureViz: linking Cytoscape and UCSF Chimera". Bioinformatics. 23 (17): 2345–7. doi:10.1093/bioinformatics/btm329

Network motif (10,178 words) [view diff] exact match in snippet view article find links to article

is shown below: Recently a Cytoscape plugin called CytoKavosh is developed for this software. It is available via Cytoscape web page [1]. In 2010, Pedro

Reactome (1,585 words) [view diff] exact match in snippet view article find links to article

functional interaction (FI) network view of pathways. ReactomeFIViz is a Cytoscape app designed to find pathways and network patterns related to diseases

Gene set enrichment analysis (4,486 words) [view diff] exact match in snippet view article find links to article

enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap". Nature Protocols. 14 (2): 482–517. doi:10.1038/s41596-018-0103-9

Biochemical cascade (11,432 words) [view diff] exact match in snippet view article find links to article

1186/gb-2007-8-9-r183. PMC 2375021. PMID 17784955. Maere, S (2005). "BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological

List of datasets for machine-learning research (13,232 words) [view diff] exact match in snippet view article find links to article

kaggle.com. Retrieved 22 August 2018. Shannon, Paul; et al. (2003). "Cytoscape: a software environment for integrated models of biomolecular interaction

RAD21 (5,500 words) [view diff] exact match in snippet view article find links to article

Figure 3 Functional classification of RAD21 interactors. Fig output by Cytoscape with the data retrieved from Panigrahi et al. 2012. Network nodes represent

Gene Disease Database (4,135 words) [view diff] exact match in snippet view article find links to article

PMC 3629079. PMID 23613709. Bauer-Mehren, A.; Rautscha, M. (2010). "DisGeNET: a Cytoscape plugin to visualize, integrate, search and analyze gene–disease networks"