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Longer titles found: Graph edit distance (view), Time Warp Edit Distance (view)

searching for Edit distance 24 found (88 total)

Medoid (4,019 words) [view diff] exact match in snippet view article find links to article

of text data, edit distance can be used to compare the similarity between short text documents or individual words. A lower edit distance indicates a higher

Binary Alignment Map (354 words) [view diff] exact match in snippet view article find links to article

Single-end alignment quality (SM) Paired-end alignment quality (AS) Edit distance tag (NM) Amplicon name tag (XN) Bam format uses 0-based coordinate system

Generalized tree alignment (182 words) [view diff] exact match in snippet view article find links to article

following optimization problem. Input: A set S {\displaystyle S} and an edit distance function d {\displaystyle d} between sequences, Output: A tree T {\displaystyle

Dan Hirschberg (223 words) [view diff] exact match in snippet view article find links to article

Hirschberg's algorithm for this problem and for the related string edit distance problem solves it efficiently in only linear space. He is also known

SAM (file format) (1,100 words) [view diff] exact match in snippet view article

binary encoding if (and only if) it consists of >65535 operators CM i Edit distance between the color sequence and the color reference (see also NM) CO

Tandem repeat (1,062 words) [view diff] case mismatch in snippet view article find links to article

Tandem Repeats Finder Mreps STAR Splinter TRED - Tandem Repeats over the Edit Distance TandemSWAN Microsatellite repeats finder JSTRING - Java Search for Tandem

Apache Lucene (1,262 words) [view diff] exact match in snippet view article find links to article

searching. Lucene includes a feature to perform a fuzzy search based on edit distance. Lucene has also been used to implement recommendation systems. For

Benjamin Rossman (737 words) [view diff] case mismatch in snippet view article find links to article

Weimann, Oren (2007). "An Optimal Decomposition Algorithm for Tree Edit Distance". Automata, Languages and Programming. Lecture Notes in Computer Science

Caitra (997 words) [view diff] exact match in snippet view article find links to article

string edit distance measure. The prediction is the optimal completion path that matches the user input with (a) minimal string edit distance and (b)

MUMmer (819 words) [view diff] exact match in snippet view article find links to article

can be accessed online. There are other types of sequence alignments: Edit distance BLAST Bowtie BWA Blat Mauve LASTZ BLAST Delcher, A. L.; Kasif, S.; Fleischmann

Semantic similarity (4,216 words) [view diff] exact match in snippet view article find links to article

the entities, such as using the Levenshtein distance to measure the edit distance between entity labels. However, it is difficult to capture the semantic

Machtey Award (174 words) [view diff] case mismatch in snippet view article find links to article

2021 Xiao Mao (MIT) "Breaking the Cubic Barrier for (Unweighted) Tree Edit Distance" 2020 Rahul Ilango (MIT) "The Constant Depth Formula and Partial Function

List of algorithms (7,843 words) [view diff] exact match in snippet view article find links to article

distance: is a measure of similarity between two strings Levenshtein edit distance: computes a metric for the amount of difference between two sequences

Multiple sequence alignment (6,169 words) [view diff] exact match in snippet view article find links to article

the evolutionary operator of point mutations can be used to define an edit distance for coding sequences, but this has little meaning for TFBS sequences

Sequence analysis in social sciences (10,017 words) [view diff] exact match in snippet view article find links to article

Research, which hosted a debate over the use of the optimal matching (OM) edit distance for comparing sequences. In particular, sociologists objected to the

Panos Kalnis (300 words) [view diff] exact match in snippet view article find links to article

colleagues developed a tree traversal algorithm which showed suggested edit distance which in turn reduced computation cost. In 2009, along with Gabriel

List of sequence alignment software (2,355 words) [view diff] exact match in snippet view article find links to article

client-server Free, GPL 2 RazerS No read length limit. Hamming or edit distance mapping with configurable error rates. Configurable and predictable

List of protein tandem repeat annotation software (748 words) [view diff] exact match in snippet view article find links to article

no no TRED 2007 downloadable definition for tandem repeats over the edit distance and an efficient, deterministic algorithm for finding these repeats

Srinivas Aluru (1,151 words) [view diff] exact match in snippet view article find links to article

sequence matching. He also solved the open problem of computing string edit distance or biological sequence alignments in optimal time and space. He collaborated

Evaluation of machine translation (3,294 words) [view diff] exact match in snippet view article find links to article

these two aspects. For instance, for lexical similarity, it contains edit distance, precision, recall and word order; for linguistic feature, it is divided

Graph removal lemma (5,001 words) [view diff] exact match in snippet view article find links to article

However, there are situations in the induced case where the optimal edit distance involves changing edge colors from blue to red as well. Thus, the Regularity

Edwin Hancock (1,309 words) [view diff] case mismatch in snippet view article find links to article

27(7): 1112–1124 (2005). Antonio Robles-Kelly, Edwin R. Hancock, Graph Edit Distance from Spectral Seriation. IEEE Trans. Pattern Anal. Mach. Intell. 27(3):

List of RNA-Seq bioinformatics tools (20,371 words) [view diff] no match in snippet view article find links to article

or mask contaminants based on kmer-matching, allowing a hamming- or edit-distance, as well as degenerate bases. Also performs optimal quality-trimming

Ancient pathogen genomics (5,940 words) [view diff] exact match in snippet view article find links to article

bases. For this reason, the acceptance threshold for read-to-reference edit distance should be chosen according to the phylogenetic distance to the reference