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searching for FASTA format 15 found (39 total)

William Pearson (scientist) (427 words) [view diff] exact match in snippet view article

University of Virginia. Pearson is best known for the development of the FASTA format. Pearson graduated with a BS in chemistry from the University of Illinois

Formatdb (245 words) [view diff] exact match in snippet view article find links to article

source database may be in either FASTA or ASN.1 format. Although the FASTA format is most often used as input to formatdb, the use of ASN.1 is advantageous

Proteome Analyst (455 words) [view diff] exact match in snippet view article find links to article

and then uploading a text file containing the protein sequence in a FASTA format. Proteome Analyst then uses BLAST to look for similar proteins in the

DPVweb (640 words) [view diff] exact match in snippet view article find links to article

amino acid sequences) can be directly downloaded from the website in FASTA format.[citation needed] The sequence information can also be accessed via client

ViennaRNA Package (787 words) [view diff] exact match in snippet view article find links to article

z-scores for locally stable secondary structures, and support for input in FASTA format. The updates, however, are compatible with earlier versions without affecting

Open reading frame (1,898 words) [view diff] exact match in snippet view article find links to article

query sequences. The output is the predicted peptide sequences in the FASTA format, and a definition line that includes the query ID, the translation reading

UCSC Genome Browser (1,641 words) [view diff] exact match in snippet view article find links to article

GUI interface for mining the information in the browser database, a FASTA format sequence alignment tool BLAT that is also useful for simply finding sequences

Protein Structure Evaluation Suite & Server (710 words) [view diff] exact match in snippet view article find links to article

structure validation reports. PDB file (required) Protein sequence in FASTA format (optional) Distance restraints in XPLOR-NIH format (optional) NMR chemical

Molecular Evolutionary Genetics Analysis (3,539 words) [view diff] exact match in snippet view article find links to article

MEGA, it is advisable to save the alignment session in either MEGA or FASTA format. Trace Data File Viewer/Editor ― The Trace Data File Viewer/Editor has

List of phylogenetic tree visualization software (1,622 words) [view diff] case mismatch in snippet view article find links to article

allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView an online tool for visualizing, annotating and managing phylogenetic

MAFFT (2,097 words) [view diff] exact match in snippet view article find links to article

Here is an example of a FASTA format, to see more available formats click on the following link: https://www.ebi.ac.uk/seqdb/confluence/display/JDSAT/

BASys (576 words) [view diff] exact match in snippet view article find links to article

map generation Data types captured Data input: Raw genome sequence (FASTA format), labeled genome sequence (FAST format) or predicted/labeled proteome

FAM149A (1,841 words) [view diff] exact match in snippet view article find links to article

FAM149A promoter region (FASTA format)

List of protein subcellular localization prediction tools (5,139 words) [view diff] case mismatch in snippet view article find links to article

properties for each protein in a proteome. The user provides a proteome in fasta format, and the system employs Psi-blast, Psipred and Modeller to predict protein

List of RNA-Seq bioinformatics tools (20,371 words) [view diff] exact match in snippet view article find links to article

like Bowtie. Some of the tasks allowed are: conversion from FASTQ to FASTA format, information about statistics of quality, removing sequencing adapters