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Longer titles found: List of molecular graphics systems (view)

searching for Molecular graphics 80 found (143 total)

Coot (software) (1,417 words) [view diff] exact match in snippet view article

access from both the Python and Guile scripting languages. The CCP4mg molecular graphics software from Collaborative Computational Project Number 4 is a related

PDBsum (502 words) [view diff] exact match in snippet view article find links to article

the structure and links to external databases. The RasMol and Jmol molecular graphics software are used to provide a 3D view of molecules and their interactions

CCP4 (file format) (120 words) [view diff] exact match in snippet view article

(see wave function) The CCP4 format is supported by almost every molecular graphics suite that supports volumetric data. The major packages include: Visual

Michelle Francl (680 words) [view diff] case mismatch in snippet view article find links to article

chemists, Francl is a member of the editorial board for the Journal of Molecular Graphics and Modelling, active in the American Chemical Society and the author

Jeffry D. Madura (524 words) [view diff] case mismatch in snippet view article find links to article

passing, the Molecular Graphics and Modelling Society renamed its annual prize for the best use of graphics in the Journal of Molecular Graphics and Modelling

Collaborative Computational Project Number 4 (243 words) [view diff] case mismatch in snippet view article find links to article

users worldwide. CCP4i – CCP4 Graphical User Interface CCP4MG – CCP4 Molecular Graphics Project Coot – Graphical Model Building HAPPy – automated experimental

C–H···O interaction (615 words) [view diff] case mismatch in snippet view article find links to article

hydrocarbons and water: Influence of aromatic system size". Journal of Molecular Graphics and Modelling. 80: 121–125. doi:10.1016/j.jmgm.2017.12.014. ISSN 1093-3263

Hexacene (502 words) [view diff] exact match in snippet view article find links to article

1583–1586. doi:10.1039/C6CC09327B. ISSN 1359-7345. PMID 27990553. Molecular graphics representation of the X-ray crystallographic structure determined

Protein Data Bank (1,665 words) [view diff] exact match in snippet view article find links to article

data determined by X-ray diffraction; and the newly available (1968) molecular graphics display, the Brookhaven RAster Display (BRAD), to visualize these

Cytidine deaminase (1,066 words) [view diff] case mismatch in snippet view article find links to article

crystal structure of a distantly related dimeric homologue". Journal of Molecular Graphics & Modelling. 25 (1): 10–6. doi:10.1016/j.jmgm.2005.10.008. PMID 16303324

Mechanism of action (1,849 words) [view diff] case mismatch in snippet view article find links to article

cyclooxygenase-1 by aspirin as predicted by QM/MM calculations". Journal of Molecular Graphics and Modelling. 40: 99–109. doi:10.1016/j.jmgm.2012.12.013. PMID 23384979

List of formerly open-source or free software (781 words) [view diff] case mismatch in snippet view article find links to article

"schrodinger/pymol-open-source". GitHub. Retrieved 2019-06-24. "PyMOL Molecular Graphics System". SourceForge. "Open-Source PyMOL". Schrodinger, Inc. 2021-11-05

Tyrosine aminotransferase (965 words) [view diff] exact match in snippet view article find links to article

41 (1): 82–4. doi:10.1016/j.jdermsci.2005.10.007. PMID 16318910. Molecular graphics images were produced using the UCSF Chimera package from the Resource

Jeni Tennison (932 words) [view diff] case mismatch in snippet view article find links to article

Tennison, J. (1997). "First Molecular Graphics and Modelling Society Electronic Conference". Journal of Molecular Graphics and Modelling. 15 (2): 141–144

Mannose phosphate isomerase (1,030 words) [view diff] case mismatch in snippet view article find links to article

molecular dynamics simulation of enzyme bound substrate". Journal of Molecular Graphics & Modelling. 25 (3): 289–95. doi:10.1016/j.jmgm.2006.01.001. PMID 16488169

Tachyon (software) (2,382 words) [view diff] exact match in snippet view article

Beginning in 1999, support for Tachyon was incorporated into the molecular graphics program VMD, and this began an ongoing period co-development of Tachyon

Cyrus Levinthal (174 words) [view diff] case mismatch in snippet view article find links to article

(PDF). Duardo Macagno, Barry Honig and Larry Chasin. Cyrus Levinthal on Columbia University website Early Interactive Molecular Graphics at MIT v t e

Protein topology (242 words) [view diff] case mismatch in snippet view article find links to article

topology using the logic programming language PROLOG". Journal of Molecular Graphics. 3 (4): 151–157. doi:10.1016/0263-7855(85)80027-8. Pro-origami: Protein

Complementarity-determining region (934 words) [view diff] case mismatch in snippet view article find links to article

the molecular interaction between antigen and antibody". Journal of Molecular Graphics & Modelling. 53: 128–139. doi:10.1016/j.jmgm.2014.07.005. PMID 25123651

Crotoxin (2,224 words) [view diff] case mismatch in snippet view article find links to article

its phospholipase A2 subunit: An in silico approach", Journal of Molecular Graphics and Modelling, 35, 36-42. doi:10.1016/j.jmgm.2012.01.004. Faure G

Transaldolase deficiency (1,146 words) [view diff] exact match in snippet view article find links to article

doi:10.1016/s0014-5793(00)01658-6. PMID 10869557. S2CID 33590067. Molecular graphics images were produced using the UCSF Chimera package from the Resource

Turn (biochemistry) (1,797 words) [view diff] case mismatch in snippet view article

Obradovic Z (2001). "Intrinsically disordered protein". Journal of Molecular Graphics & Modelling. 19 (1): 26–59. CiteSeerX 10.1.1.113.556. doi:10

Peter Murray-Rust (1,030 words) [view diff] case mismatch in snippet view article find links to article

Residence. In 1982, he moved to Glaxo Group Research at Greenford to head Molecular Graphics, Computational Chemistry and later protein structure determination

Anna Tramontano (497 words) [view diff] exact match in snippet view article find links to article

the University of California, San Francisco where she developed the molecular graphics package InsightII. She later joined the biocomputing programme at

Transaldolase (831 words) [view diff] exact match in snippet view article find links to article

doi:10.1016/S0014-5793(00)01658-6. PMID 10869557. S2CID 33590067. Molecular graphics images were produced using the UCSF Chimera package from the Resource

Beta-3 adrenergic receptor (2,039 words) [view diff] case mismatch in snippet view article find links to article

receptor: a computer-aided molecular modeling study". Journal of Molecular Graphics. 12 (1): 22–8, 34. doi:10.1016/0263-7855(94)80004-9. PMID 8011597

Glucose 6-phosphatase (2,331 words) [view diff] exact match in snippet view article find links to article

have potential therapeutic implications. Hexokinase G6PC G6PC2 G6PC3 Molecular graphics images were produced using UCSF Chimera. Ghosh A, Shieh JJ, Pan CJ

Acetyl-CoA synthetase (2,150 words) [view diff] case mismatch in snippet view article find links to article

42 (10): 2866–73. doi:10.1021/bi0271603. PMID 12627952. The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC. Mews P, Donahue G, Drake AM

Liver X receptor alpha (1,641 words) [view diff] case mismatch in snippet view article find links to article

(Nov 2003). "Molecular determinants of LXRalpha agonism". Journal of Molecular Graphics & Modelling. 22 (2): 173–81. doi:10.1016/S1093-3263(03)00159-1. PMID 12932788

Β-Glucuronidase (2,644 words) [view diff] exact match in snippet view article find links to article

determination of the spatial and temporal expression of the gene in question. Molecular graphics images were produced using the Chimera package from the Resource for

CSA Trust (503 words) [view diff] case mismatch in snippet view article find links to article

IUPAC newsletter". Iupac.org. Retrieved 12 March 2012. Journal of Molecular Graphics and Modelling 1998, 16 (1): 48–54. Tranter, R.L. (1989). "UK chemometrics

Martin Gerzabek (1,535 words) [view diff] case mismatch in snippet view article find links to article

Generating condensed-phase models of humid substances. In: Journal of Molecular Graphics and Modeling. 62, 2015, S. 253–261. With Tatzber, M., Stemmer, M.

Intrinsically disordered proteins (6,004 words) [view diff] case mismatch in snippet view article find links to article

Obradovic Z (2001). "Intrinsically disordered protein". Journal of Molecular Graphics & Modelling. 19 (1): 26–59. CiteSeerX 10.1.1.113.556. doi:10

ADAM10 (2,466 words) [view diff] case mismatch in snippet view article find links to article

ADAM17: in silico analysis of potency and selectivity". Journal of Molecular Graphics & Modelling. 29 (3): 436–42. doi:10.1016/j.jmgm.2010.08.006. PMID 20863729

Laccase (2,036 words) [view diff] case mismatch in snippet view article find links to article

approach to bioremediation: laccase as a case study". Journal of Molecular Graphics & Modelling. 26 (5): 845–849. doi:10.1016/j.jmgm.2007.05.005. PMID 17606396

Richard Deth (732 words) [view diff] exact match in snippet view article find links to article

protein-coupled receptors, the study of their structure using three-dimensional molecular graphics, and modeling how the binding of various drugs causes a shift in their

Mechanism of action of aspirin (1,734 words) [view diff] case mismatch in snippet view article find links to article

cyclooxygenase-1 by aspirin as predicted by QM/MM calculations". Journal of Molecular Graphics & Modelling. 40: 99–109. doi:10.1016/j.jmgm.2012.12.013. PMID 23384979

Nucleic acid design (2,110 words) [view diff] case mismatch in snippet view article find links to article

program for design in structural DNA nanotechnology". Journal of Molecular Graphics and Modelling. 25 (4): 470–80. doi:10.1016/j.jmgm.2006.03.005. PMC 3465968

Adenosine A3 receptor (2,124 words) [view diff] case mismatch in snippet view article find links to article

suggest an activation pathway of the A3 adenosine receptor". Journal of Molecular Graphics & Modelling. 25 (4): 562–577. doi:10.1016/j.jmgm.2006.05.004. PMC 6262875

Protein fold class (962 words) [view diff] case mismatch in snippet view article find links to article

Obradovic, Z (2001). "Intrinsically disordered protein". Journal of Molecular Graphics & Modelling. 19 (1): 26–59. CiteSeerX 10.1.1.113.556. doi:10

FoldX (695 words) [view diff] exact match in snippet view article find links to article

FoldX is run from the command line. A FoldX plugin for the YASARA molecular graphics program has been developed to access various FoldX tools inside a

Paul Emsley (crystallographer) (215 words) [view diff] exact match in snippet view article

Emsley, P. and Cowtan, K., 2004. Coot: model-building tools for molecular graphics. Acta Crystallographica Section D, 60(12), pp.2126-2132. Emsley, P

Acyl-CoA dehydrogenase (2,171 words) [view diff] exact match in snippet view article find links to article

1690 (1): 22–32. doi:10.1016/j.bbadis.2004.04.008. PMID 15337167. "Molecular graphics images were produced using the UCSF Chimera package from the Resource

Accessible surface area (1,420 words) [view diff] case mismatch in snippet view article find links to article

Yvinec, Mariette (1994). "Computing Connolly Surfaces". Journal of Molecular Graphics. 12 (1): 61–62. doi:10.1016/0263-7855(94)80033-2. ISSN 1093-3263.

Pravindra Kumar (1,588 words) [view diff] case mismatch in snippet view article find links to article

protein from Klebsiella pneumonia: A potential drug target". Journal of Molecular Graphics and Modelling. 116: 108262. doi:10.1016/j.jmgm.2022.108262. PMID 35839717

Q (software) (451 words) [view diff] case mismatch in snippet view article

Empirical Valence Bond Simulations in Biomolecular Systems", Journal of Molecular Graphics and Modelling, 16, 213-225. Lind C., Sund J. and Åqvist J., (2013)

M. Radhakrishna Pillai (scientist) (1,436 words) [view diff] case mismatch in snippet view article

human Smad5: a molecular model for inhibitor design". Journal of Molecular Graphics and Modelling. 24 (4): 271–277. doi:10.1016/j.jmgm.2005.09.009. PMID 16243555

Noscapine (2,869 words) [view diff] case mismatch in snippet view article find links to article

noscapine as potent tubulin binding anticancer agents". Journal of Molecular Graphics & Modelling. 106: 107933. doi:10.1016/j.jmgm.2021.107933. PMID 33991960

Beta-2 adrenergic receptor (3,372 words) [view diff] case mismatch in snippet view article find links to article

beta2-adrenergic and G protein-coupled receptor activation". Journal of Molecular Graphics & Modelling. 25 (4): 396–409. doi:10.1016/j.jmgm.2006.02.008. PMID 16574446

HEBP1 (439 words) [view diff] case mismatch in snippet view article find links to article

of the murine and human p22HBP heme-binding proteins". Journal of Molecular Graphics & Modelling. 29 (3): 396–405. doi:10.1016/j.jmgm.2010.07.008. PMID 20800521

TMPRSS2 (2,578 words) [view diff] case mismatch in snippet view article find links to article

experimental drugs binding to the SARS-CoV-2 target TMPRSS2". Journal of Molecular Graphics & Modelling. 100: 107710. doi:10.1016/j.jmgm.2020.107710. PMC 7417922

Stacking (chemistry) (3,561 words) [view diff] case mismatch in snippet view article

a novel hybrid for treatment of Alzheimer's disease". Journal of Molecular Graphics & Modelling. 25 (2): 169–175. doi:10.1016/j.jmgm.2005.12.002. PMID 16413803

UTOPIA (bioinformatics tools) (834 words) [view diff] case mismatch in snippet view article

for VIsualizing STructures and sequences of proteins". Journal of Molecular Graphics. 13 (1): 73–75, 62. doi:10.1016/0263-7855(94)00013-I. PMID 7794837

Medical animation (1,961 words) [view diff] case mismatch in snippet view article find links to article

applied to hydrogen bonds in the active site of elastase". Journal of Molecular Graphics. 7 (4): 240–2, 223–4. doi:10.1016/0263-7855(89)80009-8. PMID 2486826

Renin inhibitor (4,784 words) [view diff] case mismatch in snippet view article find links to article

novel renin inhibitors through molecular docking studies". Journal of Molecular Graphics and Modelling. 29 (3): 425–435. doi:10.1016/j.jmgm.2010.08.003. PMID 20855222

Discovery and development of HIV-protease inhibitors (4,117 words) [view diff] case mismatch in snippet view article find links to article

inhibitors for HIV-1 protease based on Nelfinavir as lead. Journal of Molecular Graphics and Modelling. 26; 634–642. Flexner, C. (2007) HIV drug development:

GABAA receptor (5,992 words) [view diff] case mismatch in snippet view article find links to article

comparative models of the human GABA type A receptor". Journal of Molecular Graphics and Modelling. 26 (4): 760–774. doi:10.1016/j.jmgm.2007.04.012. PMID 17544304

AP endonuclease (1,444 words) [view diff] exact match in snippet view article find links to article

required for ATR-Chk1 DNA damage response following oxidative stress. Molecular graphics images were produced using the UCSF Chimera package from the Resource

Energy distance (2,316 words) [view diff] case mismatch in snippet view article find links to article

Szekely-Rizzo generalization of Ward's method" (PDF). Journal of Molecular Graphics and Modelling. 28 (2): 187–195. doi:10.1016/j.jmgm.2009.06.006. PMID 19640752

Jane S. Richardson (3,195 words) [view diff] exact match in snippet view article find links to article

folding. In the 1990s the Richardsons developed the kinemage system of molecular graphics and David Richardson wrote the Mage program to display them on small

Terri Attwood (1,838 words) [view diff] case mismatch in snippet view article find links to article

Molecular and Cellular Proteomics,[citation needed] the Journal of Molecular Graphics and Modelling and the EMBnet.journal.[citation needed] Attwood held

Arthur M. Lesk (1,570 words) [view diff] exact match in snippet view article find links to article

computer program to generate schematic diagrams of proteins using molecular graphics, and he developed many algorithms now used by other researchers to

NMDA receptor (12,051 words) [view diff] case mismatch in snippet view article find links to article

the amino terminal domain in NMDA receptor modulation". Journal of Molecular Graphics & Modelling. 23 (4): 381–388. doi:10.1016/j.jmgm.2004.11.006. PMID 15670959

PROB1 (903 words) [view diff] case mismatch in snippet view article find links to article

server for protein structure and function prediction". The PyMOL Molecular Graphics System, Version 2.0 Schrödinger, LLC. "Predicted secondary structure

CCR5 receptor antagonist (5,518 words) [view diff] case mismatch in snippet view article find links to article

CCR5-targetting HIV Entry Inhibitors: Partial and Full Antagonists". Journal of Molecular Graphics & Modelling. 26 (8): 1287–95. doi:10.1016/j.jmgm.2007.12.003. PMC 2701198

SbtB protein (1,507 words) [view diff] case mismatch in snippet view article find links to article

Schulten K (February 1996). "VMD: visual molecular dynamics". Journal of Molecular Graphics. 14 (1): 33–8, 27–8. doi:10.1016/0263-7855(96)00018-5. PMID 8744570

Sam Hay (chemist) (922 words) [view diff] case mismatch in snippet view article

chemistry, University of Greenwich, UK". Retrieved 14 June 2020. Molecular Graphics and Modelling Society. "MGMS Recent Meetings". Retrieved 14 June 2020

Discovery and development of proton pump inhibitors (4,718 words) [view diff] case mismatch in snippet view article find links to article

proton pump inhibitors based on CoMFA and CoMSIA studies". Journal of Molecular Graphics and Modelling. 27 (3): 233–43. doi:10.1016/j.jmgm.2008.04.012. PMID 18676164

Geosmin synthase (1,511 words) [view diff] case mismatch in snippet view article find links to article

doi:10.1038/nprot.2010.5. PMC 2849174. PMID 20360767. The PyMOL Molecular Graphics System, Version 1.5.0.4 Schrödinger, LLC. Q9X839 (CYC2_STRCO) Reviewed

Proline-rich protein 30 (1,372 words) [view diff] case mismatch in snippet view article find links to article

JS, et al. (2001). "Intrinsically disordered protein". Journal of Molecular Graphics & Modelling. 19 (1): 26–59. doi:10.1016/s1093-3263(00)00138-8. PMID 11381529

Johan Åqvist (291 words) [view diff] case mismatch in snippet view article find links to article

empirical valence bond simulations in biomolecular systems". Journal of Molecular Graphics & Modelling. 16 (4–6): 213–225, 261. doi:10.1016/s1093-3263(98)80006-5

Christian Cambillau (1,171 words) [view diff] exact match in snippet view article find links to article

University of science). He worked there for four years and developed a new molecular graphics program TURBO-FRODO. He then moved with the protein crystallography

Meanings of minor planet names: 8001–9000 (435 words) [view diff] exact match in snippet view article find links to article

8299 8300 Iga 1994 AO2 Yuichi Iga (born 1955) is a specialist in molecular graphics and medical imaging. As an amateur astronomer, he has been energetically

Glycan-protein interactions (2,809 words) [view diff] case mismatch in snippet view article find links to article

inositol and carbohydrate binding sites on proteins". Journal of Molecular Graphics and Modelling. 28 (3): 297–303. doi:10.1016/j.jmgm.2009.08.009. ISSN 1093-3263

Noor Aldeen Atatreh (1,581 words) [view diff] case mismatch in snippet view article find links to article

interaction analysis and optimisation of virtual screening. Journal of Molecular Graphics and Modelling 2014, 52, 114-123. Atatreh, N.; Stojkoski, C.; Smith

List of geneticists (7,893 words) [view diff] exact match in snippet view article find links to article

Levinthal (1922–1990), US molecular geneticist, DNA replication, mRNA, molecular graphics Edward B. Lewis (1918–2004), US founder of developmental genetics

History of computer animation (13,377 words) [view diff] exact match in snippet view article find links to article

visualization. His research interests focused on realism in nature images, molecular graphics, computer animation, and 3D scientific visualization. He later served

Structure validation (4,707 words) [view diff] exact match in snippet view article find links to article

functionality is currently integrated into other CCP4 programs, such as the molecular graphics program CCP4mg (through the Glycoblocks 3D representation, which conforms

5-HT2C receptor agonist (5,032 words) [view diff] case mismatch in snippet view article find links to article

G-protein-coupled receptor bound to agonists and antagonists". Journal of Molecular Graphics and Modelling. 27 (1): 66–81. doi:10.1016/j.jmgm.2008.02.006. PMID 18499489

Lysine acetylsalicylate (2,793 words) [view diff] case mismatch in snippet view article find links to article

cyclooxygenase-1 by aspirin as predicted by QM/MM calculations". Journal of Molecular Graphics & Modelling. 40: 99–109. doi:10.1016/j.jmgm.2012.12.013. PMID 23384979