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et al. (2022). "The closest lineage of Archaeplastida is revealed by phylogenomics analyses that include Microheliella maris". Open Biology. 12 (210376):

Bernhard; Robertson, Hugh M.; Yoshizawa, Kazunori (December 11, 2018). "Phylogenomics and the evolution of hemipteroid insects". Proceedings of the National

D.; Heiss, A.A.; Lang, B.F.; Simpson, A.G.B.; Roger, A.J. (2013). "Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and

; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017-06-28). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of

"Data curation and modeling of compositional heterogeneity in insect phylogenomics: A case study of the phylogeny of Dytiscoidea (Coleoptera: Adephaga)"

Joanna C.; Lee, Ernest K.; Atallah, Joel; Ward, Philip S. (2013). "Phylogenomics resolves evolutionary relationships among ants, bees, and wasps". Current

; Gough, Harlan M.; Toussaint, Emmanuel F. A. (2021). "Integrative phylogenomics reveals a Permian origin of Adephaga beetles". Systematic Entomology

K.; Wipfler, B.; Schütte, K.; Beutel, R.; Misof, B. (2012). "Insect phylogenomics: Results, problems and the impact of matrix composition". Proceedings

; Shiratori, Takashi; Ishida, Ken; Hashimoto, Tetsuo (2017-12-03). "Phylogenomics places orphan protistan lineages in a novel eukaryotic super-group"

I.; Jakobsen, K.S.; Pawlowski, J. (2007). Butler, Geraldine (ed.). "Phylogenomics Reshuffles the Eukaryotic Supergroups". PLoS ONE. 2 (8): e790–. Bibcode:2007PLoSO

Yan; Zou, Chun-Yu; Wang, Qing-Feng; Chen, Jin-Ming (2020-11-01). "Phylogenomics of the aquatic plant genus Ottelia (Hydrocharitaceae): Implications

Meritxell; Chaplin, Mark A.; Del Campo, Javier; et al. (September 2015). "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals

Megadiverse Butterflies and Moths with a Novel Pipeline for Anchored Phylogenomics". Systematic Biology. 67 (1): 78–93. doi:10.1093/sysbio/syx048. PMID 28472519

conservation genetics of endangered species and biodiversity discovery, phylogenomics, molecular adaptation and speciation, and genotype to phenotype associations

Kume, Keitaro; Hashimoto, Tetsuo; Inagaki, Yuji (31 August 2021). "Phylogenomics invokes the clade housing Cryptista, Archaeplastida, and Microheliella

; Barrett, Craig F.; Ané, Cécile (November 2018), "Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene

Johnson; Christopher H. Dietrich; Frank Friedrich; et al. (Dec 2018). "Phylogenomics and the evolution of hemipteroid insects". Proceedings of the National

I.; Hankeln, T.; Struck, T. H.; Lieb, B. (2007-06-29). "Spiralian Phylogenomics Supports the Resurrection of Bryozoa Comprising Ectoprocta and Entoprocta"

1554/05-280.1. PMID 16261740. S2CID 18665436. Eisen, J.; Fraser, C. (2003). "Phylogenomics: intersection of evolution and genomics". Science. 300 (5626): 1706–1707

Maximilian J. Telford (2011). "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata". Proceedings

S. (2012). "Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model". Proceedings of the National

; Barrett, Craig F.; Ané, Cécile (November 2018), "Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene

Friedrich, Frank; Beutel, Rolf G.; Wipfler, Benjamin; et al. (2018-12-11). "Phylogenomics and the evolution of hemipteroid insects". Proceedings of the National

Gonzalo; Rouse, Greg W. (November 2015). "Articulating "Archiannelids": Phylogenomics and Annelid Relationships, with Emphasis on Meiofaunal Taxa". Molecular

Initiative) (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2

Apurva; Burns, John A.; DeSalle, Rob; Schierwater, Bernd (2022-12-08). "Phylogenomics and the first higher taxonomy of Placozoa, an ancient and enigmatic

Mylnikov, Alexander P.; Burki, Fabien; Keeling, Patrick J. (2019-01-01). "Phylogenomics supports the monophyly of the Cercozoa". Molecular Phylogenetics and

P.-J. G.; Coissac, E.; Ralimanana, H.; Vorontsova, M. S. (2013). "Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage

Asteraceae with two nested events in the early history revealed by nuclear phylogenomics". Mol. Biol. Evol. 33 (11): 2820–2835. doi:10.1093/molbev/msw157. PMC 5062320

Gonzalo; Rouse, Greg W. (November 2015). "Articulating "Archiannelids": Phylogenomics and Annelid Relationships, with Emphasis on Meiofaunal Taxa". Molecular

Kazunori; Walden, Kimberly K. O.; Sweet, Andrew D.; et al. (2021). "Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence

Rebecchi L, Peterson KJ, Pisani D (September 2011). "MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms

Chris A.; Godwin, Rebecca L.; Hedin, Marshal & Agnarsson, Ingi (2014). "Phylogenomics resolves a spider backbone phylogeny and rejects a prevailing paradigm

Timmermans, M. J. T. N.; Barber, J. R.; Kawahara, A. Y. (December 2019). "Phylogenomics resolves major relationships and reveals significant diversification

S. (2012). "Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model". Proceedings of the National

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

Rushforth, Keith; Zhang, Zhi-Xiang (July 2022). "Recent advances on phylogenomics of gymnosperms and a new classification". Plant Diversity. 44 (4): 340–350

Morgenstern, Burkhard; Wörheide, Gert; Manuel, Michaël (April 2009). "Phylogenomics Revives Traditional Views on Deep Animal Relationships". Current Biology

Christopher M.; Pérez-Cordón, Gregorio; Eme, Laura (2015-09-21). "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals

Wu, Chung-Shien; Chaw, Shu-Miaw; Huang, Ya-Yi (2013). "Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads". Genome Biology and

Pérez-Cordón, Gregorio; Whipps, Christopher M. (21 September 2015). "Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals

Hashimoto, Tetsuo; Simpson, Alastair; Roger, Andrew (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

0201. ISSN 0076-2997. Pabst, Emily A; Kocot, Kevin M (2018-08-01). "Phylogenomics confirms monophyly of Nudipleura (Gastropoda: Heterobranchia)". Journal

Zhang SZ, Wan T, Rushforth K, Zhang ZX (2020). "Recent advances on phylogenomics of gymnosperms and a new classification". Plant Diversity. 44 (4): 340–350

Thomas; Struck, Torsten H.; Lieb, Bernhard (2007-12-01). "Spiralian Phylogenomics Supports the Resurrection of Bryozoa Comprising Ectoprocta and Entoprocta"

M.; Oswald, J. D. (2018). "Owlflies are derived antlions: Anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera)"

; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017-07-18). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

Shiratori, Takashi; Ishida, Ken-Ichiro; Hashimoto, Tetsuo (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

October 2022. For example: DeSalle, Rob; Rosenfeld, Jeffrey (2013). Phylogenomics: A Primer. Garland Science. ISBN 978-0815342113. Cross, F.L.; Livingstone

Shiratori T, Ishida KI, Hashimoto T, Simpson A, Roger A (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

S.d.; Lemmon, Emily Moriarty (2016-04-01). "The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs

Ames, Mercedes; Spalink, Daniel; Moeller, Jackson R. (2016-12-01). "Phylogenomics and historical biogeography of the monocot order Liliales: out of Australia

Burki, Fabien; Shalchian-Tabrizi, Kamran & Pawlowski, Jan (2008). "Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes"

1463-6409.2008.00340.x. S2CID 85905070. Johnson, B.R.; et al. (2013). "Phylogenomics Resolves Evolutionary Relationships among Ants, Bees, and Wasps". Current

"Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics". New Phytol. 214 (3): 1355–1367. doi:10.1111/nph.14461. PMID 28186635

Kayal, Ehsan; Bentlage, Bastian; Sabrina Pankey, M.; et al. (2018). "Phylogenomics provides a robust topology of the major cnidarian lineages and insights

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

patient originated. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

August 1999. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Wayback Machine Hamilton, C.A., St Laurent, R.A., Dexter, K. et al. Phylogenomics resolves major relationships and reveals significant diversification

2015-12-02. Retrieved 2018-05-14. Streicher, J. W.; Ruane, S. (2018). "Phylogenomics of Snakes". eLS: 1–8. doi:10.1002/9780470015902.a0027476. ISBN 9780470015902

Carpenter, E.; et al. (2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2

Initiative) (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2

; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017-07-18). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of

Porfirio-Sousa AL, Ribeiro GM, Tice AK, Pánek T, Kang S, Brown MW (2019). "Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

James; Bond, Jason E.; Griswold, Charles; Hedin, Marshal (2021-03-24). "Phylogenomics and biogeography of leptonetid spiders (Araneae : Leptonetidae)". Invertebrate

Shiratori, Takashi; Ishida, Ken-Ichiro; Hashimoto, Tetsuo (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

Maximilian J. (2010). "A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata". Proceedings

1463-6409.2008.00340.x. S2CID 85905070. Johnson, B.R.; et al. (2013). "Phylogenomics Resolves Evolutionary Relationships among Ants, Bees, and Wasps". Current

1099/00207713-30-1-225. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Wu S (2012). "Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model". Proceedings of the National

Alexander K.; Pánek, Tomáš; Kang, Seungho; Brown, Matthew W. (2019-03-18). "Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight

1099/00207713-30-1-225. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

PMC 3267136. PMID 21920981. Kawahara, A. Y.; Breinholt, J. W. (2014). "Phylogenomics provides strong evidence for relationships of butterflies and moths"

of social parasitism in Australian Myrmecia bulldog ants revealed by phylogenomics". Molecular Phylogenetics and Evolution. 186. doi:10.1016/j.ympev.2023

1186/1471-2148-13-93. PMC 3682911. PMID 23627680. Streicher, J. W.; Ruane, S. (2018). "Phylogenomics of Snakes". eLS: 1–8. doi:10.1002/9780470015902.a0027476. ISBN 9780470015902

Michael S.; Bouchard, Patrice; Huang, Diying (23 March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

Kim, Daemin; Taylor, Andrew T.; Near, Thomas J. (June 6, 2022). "Phylogenomics and species delimitation of the economically important Black Basses

ISBN 0665100558. Misof, B.; Liu, S.; Meusemann, K.; Peters, R.S.; et al. (2014). "Phylogenomics resolves the timing and pattern of insect evolution". Science. 346 (6210):

L.; Guillette, L. J. Jr.; Iguchi, T. (2010-03-17). "From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes". Cytogenetic

L.; Guillette, L. J. Jr.; Iguchi, T. (2010-03-17). "From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes". Cytogenetic

Christopher H; Kevin P, Johnson (2021-06-16). Buckley, Thomas (ed.). "Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence

College. Misof, B.; Liu, S.; Meusemann, K.; Peters, R.S.; et al. (2014). "Phylogenomics resolves the timing and pattern of insect evolution". Science. 346 (6210):

Gutiérrez-Preciado, Ana; Karpov, Sergey A; Moreira, David (2022-07-28). "Phylogenomics Supports the Monophyly of Aphelids and Fungi and Identifies New Molecular

Shiratori, Takashi; Ishida, Ken-Ichiro; Hashimoto, Tetsuo (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

1463-6409.2008.00340.x. S2CID 85905070. Johnson, B.R.; et al. (2013). "Phylogenomics Resolves Evolutionary Relationships among Ants, Bees, and Wasps". Current

93. Misof, B.; Liu, S.; Meusemann, K.; Peters, R.S.; et al. (2014). "Phylogenomics resolves the timing and pattern of insect evolution". Science. 346 (6210):

Shiratori, Takashi; Ishida, Ken-Ichiro; Hashimoto, Tetsuo (2018-01-19). "Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group"

Michael S.; Bouchard, Patrice; Huang, Diying (March 2022). "Integrated phylogenomics and fossil data illuminate the evolution of beetles". Royal Society

Christopher H; Kevin P, Johnson (2021-06-16). Buckley, Thomas (ed.). "Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence

1463-6409.2008.00340.x. S2CID 85905070. Johnson, B.R.; et al. (2013). "Phylogenomics Resolves Evolutionary Relationships among Ants, Bees, and Wasps". Current

samples in Spain. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Wahl, David B.; Rousse, Pascal; Bennett, Andrew M. R.; et al. (2021). "Phylogenomics of Ichneumoninae (Hymenoptera, Ichneumonidae) reveals pervasive morphological

Turturicola Upupicola Vernoniella Wilsoniella de Moya, Robert S. (2022). "Phylogenomics and host-switching patterns of Philopteridae (Psocodea: Phthiraptera)

Little, Stefan A.; Sauquet, Hervé; Erkens, Roy H.J. (2019-01-09). "Phylogenomics of the Major Tropical Plant Family Annonaceae Using Targeted Enrichment

Christopher H; Kevin P, Johnson (2021-06-16). Buckley, Thomas (ed.). "Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence

Tao; Rushforth, Keith; Zhang, Zhi-Xiang (2022). "Recent advances on phylogenomics of gymnosperms and a new classification". Plant Diversity. 44 (4): 340–350

PMID 7684243. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

H.; Akishinonomiya, F.; Willerslev, E.; Hasegawa, M. (2016-12-15). "Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution

2017). "Type III Polyketide Synthases: Functional Classification and Phylogenomics". ChemBioChem. 18 (1): 50–65. doi:10.1002/cbic.201600522. PMID 27862822

Species. www.marinespecies.org. Retrieved 2021-04-03. O'Hara T (2019). "Phylogenomics, life history and morphological evolution of ophiocomid brittlestars"

Todt, Christiane; Mikkelsen, Nina T.; Halanych, Kenneth M. (2019). "Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot"

; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017-07-18). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of

PMID 16738122. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

1099/00207713-31-3-263. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Vacelet, Jean; Renard, Emmanuelle; Houliston, Evelyn (April 2009). "Phylogenomics Revives Traditional Views on Deep Animal Relationships". Current Biology

S2CID 23323065. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Pamela S. (October 2019). "One thousand plant transcriptomes and the phylogenomics of green plants". Nature. 574 (7780): 679–685. doi:10.1038/s41586-019-1693-2

; Wake, David B.; Cannatella, David C.; Zhang, Peng (2017-07-18). "Phylogenomics reveals rapid, simultaneous diversification of three major clades of

S, Bertelli C, Droz S, Casanova C, Prod'hom G, et al. (June 2019). "Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages

Olivier S. G.; Ruane, Sara; Pirro, Stacy; Merilä, Juha (2024-04-25). "Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description

0087718. PMC 3914857. PMID 24505307. Gupta, R. S. and Mok, A. (2007). Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups

1099/00207713-31-3-247. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

Giulia M.; Pánek, Tomáš; Kang, Seungho; Brown, Matthew W. (2019). "Phylogenomics and Morphological Reconstruction of Arcellinida Testate Amoebae Highlight

Christopher H; Kevin P, Johnson (2021-06-16). Buckley, Thomas (ed.). "Phylogenomics of Parasitic and Nonparasitic Lice (Insecta: Psocodea): Combining Sequence

M.; Lemmon, A. R.; Wheeler, W. C. (2016). "The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow-mouthed frogs

Maximilian; Ma, Hong (2020-11-01). Saitou, Naruya (ed.). "Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and

Wenying; Zhou, Shiliang; Zhang, Zhixiang; Suo, Zhili (January 2022). "Phylogenomics and biogeography of Catalpa (Bignoniaceae) reveal incomplete lineage

2002-2013.1992. PMC 205807. PMID 1548238. Gao B, Mohan R, Gupta RS (2009). "Phylogenomics and protein signatures elucidating the evolutionary relationships among

Bernhard; Liu, Shanlin; Meusemann, Karen; Peters, Ralph S.; et al. (2014). "Phylogenomics resolves the timing and pattern of insect evolution". Science. 346 (6210):

1099/00207713-30-1-225. Gupta, Radhey S.; Lo, Brian; Son, Jeen (2018-02-13). "Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus

279(1731), 1093–1099. Kawahara, A. Y., & Breinholt, J. W. (2014). "Phylogenomics provides strong evidence for relationships of butterflies and moths"

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