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searching for Phyre 58 found (67 total)

alternate case: phyre

PhyreEngine (677 words) [view diff] exact match in snippet view article find links to article

PhyreEngine is a license-only free to use game engine from Sony Interactive Entertainment, compatible with PlayStation 5, PlayStation 4, PlayStation 3

Mask (song) (1,531 words) [view diff] exact match in snippet view article

[they] can", and that he had paid both Phyre and the animators over three times the amount they had asked for. Phyre Studios has since had mixed opinions

Vampire: The Masquerade – Bloodlines 2 (2,376 words) [view diff] exact match in snippet view article find links to article

will be playable at launch. Phyre will see a three-front siege in Seattle during a historic Christmas time snow-storm. Phyre is an elder vampire, meaning

Anye Elite (1,171 words) [view diff] exact match in snippet view article find links to article

Elite helped organize Phyre, Atlanta's first weeklong celebration of black gay, lesbian, bisexual, and transgender history. Phyre includes the controversial

DMAC1 (1,592 words) [view diff] case mismatch in snippet view article find links to article

Consortium. "Vega: Transcript: C9orf123-003". "PHYRE: Protein Homology/analogY Recognition Engine". PHYRE. Kelley, LA; Sternberg, MJE (2009). "Protein structure

TMEM156 (901 words) [view diff] exact match in snippet view article find links to article

below. TMEM156 has a secondary structure composed of primarily α-helices. Phyre was used to create this structure that can be viewed on the right hand side

Michael Sternberg (1,435 words) [view diff] exact match in snippet view article find links to article

His group, particularly Lawrence Kelley, have developed the widely used Phyre/Phyre2 web server for protein structure prediction. This web resource has

FAM180b (673 words) [view diff] exact match in snippet view article find links to article

exceeding 100% when totaled. The predicted tertiary structure obtained from Phyre 2[permanent dead link] can be seen in Figure 3. on the right. FAM180b has

List of Internet Relay Chat commands (3,470 words) [view diff] exact match in snippet view article find links to article

like this (with @ being the highest status prefix) :irc.server.net 353 Phyre = #SomeChannel :@WiZ If a client wants to receive all the channel status

CCDC47 (1,160 words) [view diff] case mismatch in snippet view article find links to article

Retrieved 7 March 2014. "Sulfinator". ExPASy. Retrieved 7 April 2014. "PHYRE 2 Protein Recognition Software". Retrieved 14 April 2014. Mason JM, Arndt

Chromosome 4 open reading frame 50 (524 words) [view diff] exact match in snippet view article find links to article

and lower than normal amounts of phenylalanine and tyrosine. i-TASSER and Phyre 2 predict C4orf50 to have a tertiary structure rich in alpha helices concentrated

FAM214A (1,913 words) [view diff] case mismatch in snippet view article find links to article

Biology Workbench and Protein Homology/analogY Recognition Engine (PHYRE). The PHYRE program predicts that 66 percent of the FAM214A secondary structure

IGSF6 (1,451 words) [view diff] exact match in snippet view article find links to article

Center for Biotechnology Information, U.S. National Library of Medicine. Phyre Predicted Structure of IGSF6 iCN3D [1]. NCBI (National Library of Medicine)

FAM210B (853 words) [view diff] exact match in snippet view article find links to article

majority of the structure is composed of alpha helices. As predicted my Phyre 2, 61% of the protein forms alpha helices, and 28% forms transmembrane segments

FAM227a (1,041 words) [view diff] exact match in snippet view article find links to article

the web: a case study using the Phyre server. Kelley LA and Sternberg MJE. Nature Protocols 4, 363-371 (2009) "Phyre 2 Results for FAM227A_Whole_Protein"

TMEM169 (1,427 words) [view diff] exact match in snippet view article find links to article

org. Retrieved 2020-12-16. "Phyre 2 alignment of Undefined with c5doqC_". www.sbg.bio.ic.ac.uk. Retrieved 2020-12-18. "Phyre 2 alignment of Undefined with

FAM203B (1,500 words) [view diff] exact match in snippet view article find links to article

amino acid multiplets. The secondary structure prediction generated by the Phyre 2.0 bioinformatic server shows only α-helices, almost all of which have

RAPTOR (software) (1,124 words) [view diff] exact match in snippet view article

13 104.69 110.79 82.92 3 pro-sp3-TASSER 171 116.05 103.38 109.95 80.88 4 Phyre_de_novo 171 115.35 103.47 110.00 82.51 5 BAKER-ROBETTA 171 115.12 102.68

TMEM212 (1,636 words) [view diff] exact match in snippet view article find links to article

Table 1. Table 1: TMEM212 Protein Characteristics in Humans and Orthologs Phyre 2 and Ali2D predict TMEM212 to have a secondary structure rich in alpha

ZNF837 (550 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the Web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157

Powerband (video game) (452 words) [view diff] exact match in snippet view article

Rimms, Terbie Blower, Cruncher Gears, Torson Barrs, Eeza Weaver, Wilson Phyre), though actual circuits were used. The game had three modes - Fun, Race

CCDC113 (1,000 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the Web: a case study using the Phyre server". Nat Protoc. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157

C2orf81 (854 words) [view diff] exact match in snippet view article find links to article

Secondary Structure Prediction Server". www.biogem.org. Retrieved 2018-05-06. "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Archived from the original

FAM63B (1,235 words) [view diff] exact match in snippet view article find links to article

FAM63B is a combination of coils, some α-helices, and few β-sheets. The Phyre 2 program predicts α-helices in 23% of the protein, β-strands in 9% of the

ABHD18 (680 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157

FAM40A (1,053 words) [view diff] exact match in snippet view article find links to article

pI/MW Tool Transmembrane domain prediction SignalP 3.0 Server SOSUI System Phyre v. 2.0[permanent dead link] "RNA Folding Form". Archived from the original

C16orf86 (2,429 words) [view diff] exact match in snippet view article find links to article

beta sheets. For the predicting location of alpha helices and beta sheets, Phyre 2 was used. For the alpha helices, there is a high-level prediction for

CZIB (931 words) [view diff] exact match in snippet view article find links to article

2013-09-22. Protein structure prediction on the web: a case study using the Phyre server Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009)

SH3D21 (752 words) [view diff] exact match in snippet view article find links to article

"SH3 domain-containing protein 21 isoform 2". NCBI. Retrieved 9 May 2013. "Phyre 2 Secondary Structure Analysis". Retrieved 14 May 2013. "PELE Analysis"

SOGA2 (1,538 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the Web: a case study using the Phyre server" (PDF). Nat Protoc. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157

C14orf119 (2,146 words) [view diff] exact match in snippet view article find links to article

MyHits Motif Scan. "Phyre 2 Results for c14orf119". sbg.bio.ic.ac.uk. Retrieved May 3, 2020. "GOR page for c14orf119 protein". GOR. "Phyre 2 Results for c14orf119"

FAM71F2 (1,037 words) [view diff] exact match in snippet view article find links to article

dead link] "PSORT II Prediction". psort.hgc.jp. Retrieved 2017-05-07. "Phyre 2 Results for FAM71F2__". www.sbg.bio.ic.ac.uk. Retrieved 2017-05-07.[permanent

ATX-II (1,221 words) [view diff] exact match in snippet view article find links to article

ATX-II 3D structure prediction model Confidence in the model: 47 residues (100%) modelled at >90% accuracy. Created by Phyre V 2.0

OCC-1 (1,147 words) [view diff] exact match in snippet view article find links to article

a combination of multiple coils, a few α-helices, and few β-sheets. The Phyre 2 program 52% α-helices, 6% β-sheets, and 70% disordered. The predicted

George Bennett (cyclist) (4,911 words) [view diff] exact match in snippet view article

participated in the Tour de France, where he wore Māori-themed Shimano S-Phyre shoes painted by his artist girlfriend, Caitlin Fielder. Bennett's form

C11orf49 (1,337 words) [view diff] exact match in snippet view article find links to article

CK049 Protein | CK049 Antibody". www.genecards.org. Retrieved 2020-12-17. "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Retrieved 2020-12-17.[permanent

Proline-rich protein 30 (1,372 words) [view diff] exact match in snippet view article find links to article

lacks any formal tertiary structure or quaternary structure. I-Tasser and Phyre predict minimal coiling throughout PRR30 as a whole. In the region of high

C5orf34 (1,166 words) [view diff] exact match in snippet view article find links to article

link] "ExPASy - Compute pI/Mw tool". web.expasy.org. Retrieved 2015-05-09. "Phyre Investigator output for C5orf34__ with c1umwB_". www.sbg.bio.ic.ac.uk. Retrieved

C5orf46 (969 words) [view diff] case mismatch in snippet view article find links to article

secondary structure prediction". npsa-prabi.ibcp.fr. Retrieved 2020-05-03. "PHYRE Protein Fold Recognition Server". www.sbg.bio.ic.ac.uk. Retrieved 2020-05-03

ANKRD24 (992 words) [view diff] exact match in snippet view article find links to article

2016-04-24. "SDSC Biology Workbench". workbench.sdsc.edu. Retrieved 2016-05-09. "Phyre 2 Results for My_protein". www.sbg.bio.ic.ac.uk. Retrieved 2016-04-27.[permanent

TMEM267 (1,931 words) [view diff] exact match in snippet view article find links to article

abundance Chau-Fasman prediction for TMEM267 GOR4 prediction for TMEM267 Phyre 2 Prediction for TMEM267 The Human Protein Atlas entry on TMEM267 "CSS-Palm

PANO1 (1,204 words) [view diff] exact match in snippet view article find links to article

1533033818811143. doi:10.1177/1533033818811143. PMC 6259056. PMID 30482097. "Phyre 2 Results for PANO1_phyre2". www.sbg.bio.ic.ac.uk. Retrieved 2021-08-01

PANO1 (1,204 words) [view diff] exact match in snippet view article find links to article

1533033818811143. doi:10.1177/1533033818811143. PMC 6259056. PMID 30482097. "Phyre 2 Results for PANO1_phyre2". www.sbg.bio.ic.ac.uk. Retrieved 2021-08-01

FAM71E2 (1,124 words) [view diff] exact match in snippet view article find links to article

Multiple Sequence Alignment < EMBL-EBI". www.ebi.ac.uk. Retrieved 2019-05-12. "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Retrieved 2019-05-12. "PSORT:

TMEM176B (948 words) [view diff] exact match in snippet view article find links to article

2019, https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=309291. "Phyre 2 Results For Undefined". Sbg.Bio.Ic.Ac.Uk, 2019, http://www.sbg.bio.ic

C1orf21 (1,235 words) [view diff] case mismatch in snippet view article find links to article

PHYRE. An α-helix from 18 amino acids of C1orf21.

Chromosome 9 open reading frame 43 (1,128 words) [view diff] exact match in snippet view article find links to article

C9orf43 gene & protein". www.uniprot.org. Retrieved 2018-05-05. "ELM". "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Archived from the original

Protein structure prediction (8,971 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the Web: a case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2

SNED1 (2,400 words) [view diff] exact match in snippet view article find links to article

splice variants of SNED1 that exhibited protein structure matches using the Phyre 2 database which is discussed under "Tertiary and Quaternary Structure"

LGBT representations in hip hop music (9,590 words) [view diff] exact match in snippet view article find links to article

Fuse, May 29, 2014. Simon, Mashaun D. (February 16, 2007). "Hearts A- Phyre': African-American Organizers Want to Make First Black Gay History Week

LENG9 (1,506 words) [view diff] exact match in snippet view article find links to article

zhanglab.ccmb.med.umich.edu. Retrieved 2017-05-06.[permanent dead link] "Phyre 2 Results for Undefined". www.sbg.bio.ic.ac.uk. Retrieved 2017-04-30.[permanent

GOLGA8H (1,370 words) [view diff] exact match in snippet view article find links to article

Secondary Structure Prediction Server". www.biogem.org. Retrieved 2019-05-13. "Phyre 2 Results for GOLGA8H". www.sbg.bio.ic.ac.uk. Retrieved 2019-05-13. "I-TASSER

Glutamate-rich protein 3 (1,767 words) [view diff] exact match in snippet view article find links to article

SECONDARY STRUCTURE PREDICTION METHOD". Pôle BioInformatique Lyonnais. 2015. "Phyre II". Imperial College London. 2015. Archived from the original on 2015-05-18

KIAA2012 (1,200 words) [view diff] exact match in snippet view article find links to article

Predicted KIAA2012 secondary structure with a 91.2% confidence level. (Image generated by Phyre 2.0)

FAM98A (2,448 words) [view diff] exact match in snippet view article find links to article

(2009). "Protein structure prediction on the Web: a case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2

C8orf34 (2,326 words) [view diff] exact match in snippet view article find links to article

in Gene Regulatory Proteins". Molecular Biology of the Cell (4th ed.). "Phyre 2 Results for c8orf34__". www.sbg.bio.ic.ac.uk. Retrieved 2019-05-06.[permanent

CCDC190 (2,085 words) [view diff] exact match in snippet view article find links to article

Retrieved 2021-07-31. "SAPS Results". www.ebi.ac.uk. Retrieved 2021-07-31. "Phyre 2 Results for hsa_c1orf110". www.sbg.bio.ic.ac.uk. Archived from the original

Multiple Epidermal Growth Factor-like Domains 8 (3,523 words) [view diff] exact match in snippet view article find links to article

2009). "Protein structure prediction on the web: a case study using the Phyre server". Nature Protocols. 4 (3): 363–371. doi:10.1038/nprot.2009.2. hdl:10044/1/18157