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Longer titles found: List of protein secondary structure prediction programs (view)

searching for Protein secondary structure 75 found (116 total)

alternate case: protein secondary structure

Maurice Loyal Huggins (499 words) [view diff] exact match in snippet view article find links to article

and who was an early advocate for their role in stabilizing protein secondary structure. An important polymer theory, Flory–Huggins theory, is also named

Chou–Fasman method (911 words) [view diff] exact match in snippet view article find links to article

(help) Kabsch W, Sander C (1983). "How good are predictions of protein secondary structure?". FEBS Lett. 155 (2): 179–82. doi:10.1016/0014-5793(82)80597-8

Burkhard Rost (1,472 words) [view diff] exact match in snippet view article find links to article

"Combining evolutionary information and neural networks to predict protein secondary structure". Proteins: Structure, Function, and Genetics. 19 (1): 55–72

Chris Sander (scientist) (821 words) [view diff] case mismatch in snippet view article

PMID 15502875. Rost, B.; Sander, C. (1993). "Prediction of Protein Secondary Structure at Better than 70% Accuracy". Journal of Molecular Biology. 232

Missense mutation (804 words) [view diff] exact match in snippet view article find links to article

region of the protein which does not significantly affect the protein secondary structure or function. When an amino acid may be encoded by more than one

Synonymous substitution (1,121 words) [view diff] exact match in snippet view article find links to article

influence mRNA folding stability, with mRNA encoding different protein secondary structure preferring different codons. Another reason why synonymous changes

LOC105377021 (1,220 words) [view diff] no match in snippet view article find links to article

LOC105377021 is a protein which in humans is encoded by the LOC105377021 gene. LOC105377021 exhibits expressional pathology related to breast cancer, specifically

Bidirectional recurrent neural networks (661 words) [view diff] exact match in snippet view article find links to article

Baldi, Pierre, et al. "Exploiting the past and the future in protein secondary structure prediction." Bioinformatics 15.11 (1999): 937-946. Pollastri

EMBOSS (324 words) [view diff] exact match in snippet view article find links to article

drawing Phylogenetic tree drawing methods Protein 2d structure Protein secondary structure Protein 3d structure Protein tertiary structure Protein composition

A.E. Walsby (716 words) [view diff] exact match in snippet view article find links to article

T.J., Miles, M.J. & Walsby, A.E. 1996. Direct observation of protein secondary structure in gas vesicles by atomic force microscopy. Biophysics Journal

Michael Sternberg (1,435 words) [view diff] exact match in snippet view article find links to article

J.; Taylor, W. R.; Sternberg, M. J. (1987). "Prediction of protein secondary structure and active sites using the alignment of homologous sequences"

Nuclear magnetic resonance chemical shift re-referencing (1,617 words) [view diff] exact match in snippet view article find links to article

shift index - a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy". Biochemistry. 31 (6): 1647–1651. CiteSeerX 10

Aminoglycoside (2,546 words) [view diff] exact match in snippet view article find links to article

subunit with bound drug (purple, space-filling model, at center) protein secondary structure elements such as alpha-helices in bright green, and the RNA phosphodiester

Frederic M. Richards (4,947 words) [view diff] exact match in snippet view article find links to article

he developed the chemical shift index for NMR assignment of protein secondary structure (Wishart, Sykes & Richards 1991 & Wishart, Sykes & Richards 1992)

Predictprotein (1,119 words) [view diff] exact match in snippet view article find links to article

prediction improves. Proteins, 46, 195–205. Jones D.T. (1999) Protein secondary structure prediction based on position-specific scoring matrices. J. Mol

Anders Krogh (846 words) [view diff] exact match in snippet view article find links to article

evolutionary method for learning HMM structure: prediction of protein secondary structure". BMC Bioinformatics. 8: 357. doi:10.1186/1471-2105-8-357. PMC 2072961

Gajendra Pal Singh Raghava (776 words) [view diff] exact match in snippet view article find links to article

and antigens from ELISA data, and he a prediction method for protein secondary structure prediction. In 1999 he established his research group at IMTECH

Protein chemical shift re-referencing (1,834 words) [view diff] exact match in snippet view article find links to article

shift index - a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy". Biochemistry. 31 (6): 1647–1651. CiteSeerX 10

Relative accessible surface area (675 words) [view diff] exact match in snippet view article find links to article

S2CID 22227053. Kabsch, W.; Sander, C. (1983). "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features"

DEPDC1B (2,261 words) [view diff] exact match in snippet view article find links to article

application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Science, 1996, 5:2298-2310 GGR : Garnier

Tex36 (1,675 words) [view diff] exact match in snippet view article find links to article

application of the concepts important for accurate and reliable protein secondary structure prediction. Protein Science, 1996, 5:2298-2310 GGR : Garnier

Ross D. King (1,518 words) [view diff] exact match in snippet view article find links to article

E. (1990). "Machine learning approach for the prediction of protein secondary structure". Journal of Molecular Biology. 216 (2): 441–457. doi:10

Glycosaminoglycan (2,592 words) [view diff] exact match in snippet view article find links to article

and mimecan (OGN), the consensus sequence NX(T/S) along with protein secondary structure was determined to be involved in N-linked oligosaccharide extension

Volume Area Dihedral Angle Reporter (1,711 words) [view diff] exact match in snippet view article find links to article

rather than from left to right. VADAR identifies and assigns protein secondary structure using 3 different algorithms. These three methods are then combined

David S. Wishart (3,158 words) [view diff] exact match in snippet view article find links to article

shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy". Biochemistry. 31 (6): 1647–1651. doi:10

GOR method (874 words) [view diff] exact match in snippet view article find links to article

Gibrat, J. F.; Robson, B. (1996). "GOR method for predicting protein secondary structure from amino acid sequence". Methods Enzymol. 266: 540–53. doi:10

Myelin oligodendrocyte glycoprotein (1,940 words) [view diff] exact match in snippet view article find links to article

PMID 12874380. Kabsch W, Sander C (December 1983). "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features"

I-TASSER (1,178 words) [view diff] exact match in snippet view article find links to article

Needleman-Wunsch algorithm. PSSpred: A highly accurate program for protein secondary structure prediction. Library: I-TASSER structural and functional template

Journal of Biomolecular NMR (531 words) [view diff] exact match in snippet view article find links to article

Chemical-Shift Index: A simple method for the identification of protein secondary structure using 13C chemical-shift data". Journal of Biomolecular NMR.

David T. Jones (scientist) (1,316 words) [view diff] exact match in snippet view article

PSIPRED (Predict Secondary Protein Structure), a technique for protein secondary structure prediction, and the other techniques Predict Transmembrane Topology

Carol V. Robinson (1,755 words) [view diff] exact match in snippet view article find links to article

chaperone GroEL, demonstrating that at least some aspects of protein secondary structure could be studied in the gas phase. Robinson has broken ground

Accessible surface area (1,420 words) [view diff] exact match in snippet view article find links to article

accessible surface area can be used to improve prediction of protein secondary structure. The ASA is closely related to the concept of the solvent-excluded

2-Methyl-2,4-pentanediol (597 words) [view diff] exact match in snippet view article find links to article

structure allows it to bind to many different locations on a protein secondary structure including alpha helices and beta sheets. When hexylene glycol

ZNF337 (2,715 words) [view diff] no match in snippet view article find links to article

P. troglodytes (95.6% identical to human protein) secondary structure

Intelligent Systems for Molecular Biology (2,779 words) [view diff] exact match in snippet view article find links to article

1994 were split further into three themed days, focusing on protein secondary structure prediction, sequence analysis and AI techniques and biochemical

C16orf82 (1,994 words) [view diff] exact match in snippet view article find links to article

Kloczkowski A, Faraggi E, Yang Y (2016-10-28). Prediction of protein secondary structure. New York, NY. ISBN 9781493964048. OCLC 961911230.{{cite book}}:

Steven A. Benner (3,871 words) [view diff] exact match in snippet view article find links to article

as a result of the work of Benner and Gerloff. Predictions of protein secondary structure by Benner and colleagues achieved high accuracy. It became possible

NBPF19 (640 words) [view diff] case mismatch in snippet view article find links to article

Program | Abgent". www.abgent.com. Retrieved 2018-05-05. "Advanced Protein Secondary Structure Prediction Server". crdd.osdd.net. Retrieved 2018-05-05. "Phobius"

Hugh Stott Taylor (766 words) [view diff] exact match in snippet view article find links to article

the first semi-realistic model of the α-helix, an element of protein secondary structure. An earlier model by Astbury had been shown to be physically

Neural network (machine learning) (17,066 words) [view diff] exact match in snippet view article

Lautrup, Leif Nørskov, Ole H. Olsen, and Steffen B. Petersen. "Protein secondary structure and homology by neural networks The α-helices in rhodopsin."

Fam188a (839 words) [view diff] exact match in snippet view article find links to article

has no sequence repeats. Fam188a post-translational predicted protein secondary structure Fam188a predicted transcription factor binding sites The I-TASSER

FAM46C (924 words) [view diff] exact match in snippet view article find links to article

available, that of Trichoplax adhearens. PHYRE2 was used to predict protein secondary structure of human FAM46C as well as trichoplax TRIADDRAFT-14293. We are

QRICH2 (698 words) [view diff] exact match in snippet view article find links to article

10.9% of the amino acids are Glutamine (Q). 38% of the QRICH2 protein secondary structure is alpha-helix, 39% is beta-sheet and 13% is turning. The human

CZIB (931 words) [view diff] exact match in snippet view article find links to article

oxidizes long-chain fatty acids in the mitochondria. C1orf123 protein secondary structure has been found to be very similar to that of MAL13P1.257 protein

Protein contact map (1,979 words) [view diff] exact match in snippet view article find links to article

can be investigated. HB plot offers a simple way of analyzing protein secondary structure and tertiary structure. Hydrogen bonds stabilizing secondary

Gad Landau (1,250 words) [view diff] exact match in snippet view article find links to article

as DNA and RNA comparison, clustering, haplotype inference, protein secondary structure prediction, and tandem repeats. Landau's research has been continually

C10orf35 (504 words) [view diff] case mismatch in snippet view article find links to article

Diego Supercomputer Center (SDSC). Retrieved 6 May 2016. "A Protein Secondary Structure Prediction Server". JPred. Retrieved 9 May 2016. "c10orf35".

Parvez Haris (1,133 words) [view diff] exact match in snippet view article find links to article

structure in aqueous and non-aqueous media Determination of protein secondary structure using factor analysis of infrared spectra Fourier transform infrared

LOC100287387 (849 words) [view diff] exact match in snippet view article find links to article

Gibrat, J. F.; Robson, B. (1996). "GOR method for predicting protein secondary structure from amino acid sequence". Computer Methods for Macromolecular

FAM83A (1,311 words) [view diff] exact match in snippet view article find links to article

RL, Garnier J, Kloczkowski A (June 2005). "GOR V server for protein secondary structure prediction". Bioinformatics. 21 (11): 2787–8. doi:10.1093/bioinformatics/bti408

C1orf131 (1,307 words) [view diff] exact match in snippet view article find links to article

Garnier J, Gibrat JF, Robson B (1996). "GOR method for predicting protein secondary structure from amino acid sequence". Computer Methods for Macromolecular

Aoife McLysaght (936 words) [view diff] exact match in snippet view article find links to article

; McLysaght, A. (2004). "Porter: a new, accurate server for protein secondary structure prediction" (PDF). Bioinformatics. 21 (8): 1719–1720. doi:10

Haesun Park (1,114 words) [view diff] exact match in snippet view article find links to article

Research. 6 (Jan). ISSN 1533-7928. Kim, H.; Park, H. (2003-08-01). "Protein secondary structure prediction based on an improved support vector machines approach"

SHLD1 (1,446 words) [view diff] case mismatch in snippet view article find links to article

PMC 2245901. PMID 18215316. Raghava, G. P. S. (2000). "APSSP: Advanced Protein Secondary Structure Prediction Server". T, Ashok Kumar (2013-04-01). "CFSSP: Chou

Atomic force microscopy (9,796 words) [view diff] exact match in snippet view article find links to article

M, Miszczyk J, Kwiatek WM (2017-05-30). "Differentiation of protein secondary structure in clear and opaque human lenses: AFM – IR studies". Journal

Stapled peptide (1,723 words) [view diff] exact match in snippet view article find links to article

which diminishes binding affinity. α-Helices are the most common protein secondary structure and play a key role in mediating many protein–protein interactions

Victor V. Solovyev (704 words) [view diff] exact match in snippet view article find links to article

Suppl 1: P. 10.1-10.12. - Salamov A.A.; Solovyev V.V. (199). "Protein secondary structure prediction using local alignments". J. Mol. Biol. 268 (1): 31–3

C16orf78 (1,197 words) [view diff] case mismatch in snippet view article find links to article

prediction". npsa-prabi.ibcp.fr. Retrieved 2019-05-05. "JPred: A Protein Secondary Structure Prediction Server". compbio.dundee.ac.uk. Retrieved 2019-05-05

TMEM275 (1,167 words) [view diff] case mismatch in snippet view article find links to article

Prediction Server". www.biogem.org. Retrieved 2020-05-05. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac.uk. Retrieved 2020-05-05

Turing Institute (2,908 words) [view diff] case mismatch in snippet view article find links to article

Muggleton, Stephen; King, R. D.; Sternberg, M. J. E. (1992). "Protein Secondary Structure Prediction using logic-based machine learning". Protein Engineering

C3orf67 (1,303 words) [view diff] case mismatch in snippet view article find links to article

3.1 Server". www.cbs.dtu.dk. Retrieved 2018-04-30. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac.uk. Retrieved 2018-04-24

C4orf19 (830 words) [view diff] case mismatch in snippet view article find links to article

< EMBL-EBI". www.ebi.ac.uk. Retrieved 2021-12-17. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac.uk. Retrieved 2021-12-17

CCDC78 (739 words) [view diff] exact match in snippet view article find links to article

ExPasy. Secondary structure of CCDC78 was predicted using the protein secondary structure prediction tool PELE. As would be expected with a coiled-coil

Vasant Honavar (8,139 words) [view diff] case mismatch in snippet view article find links to article

Prediction of Linear B-Cell Epitopes on Proteins". Prediction of Protein Secondary Structure. Methods in Molecular Biology. Vol. 1484. pp. 255–264. doi:10

METTL26 (1,296 words) [view diff] exact match in snippet view article find links to article

transcript variant 1. These data are collected from NCBI BLAST. The protein secondary structure can be predicted using algorithms to predict the occurrence of

TEDC2 (1,503 words) [view diff] case mismatch in snippet view article find links to article

Prediction Server". www.biogem.org. Retrieved 2019-04-22. "JPred: A Protein Secondary Structure Prediction Server". www.compbio.dundee.ac.uk. Retrieved 2019-04-22

C21orf58 (1,729 words) [view diff] no match in snippet view article find links to article

with four regions of alpha helices throughout the span of the protein. Secondary structure predictions of C21orf58 orthologs revealed similar results; random

OSER1 (1,184 words) [view diff] case mismatch in snippet view article find links to article

phosphorylation sites 3 predicted Tyrosine phosphorylation sites PELE (Protein Secondary Structure Prediction) was used to predict the secondary structure of C20orf111

Docking theory of olfaction (2,666 words) [view diff] exact match in snippet view article find links to article

Kuldip; Zhou, Yaoqi (2018). "Sixty-five years of the long march in protein secondary structure prediction: the final stretch?". Briefings in Bioinformatics

C22orf23 (1,794 words) [view diff] case mismatch in snippet view article find links to article

Fasman secondary structure prediction server". 2019-05-04. "A Protein Secondary Structure Prediction Server". Jpred 4 incorporating Jnet. 2019-05-04. "SOPMA

C11orf91 (636 words) [view diff] case mismatch in snippet view article find links to article

Prediction Server. Biogem. Retrieved 5 December 2023. JPred 4: A Protein Secondary Structure Prediction Server. JPred 4. Retrieved 5 December 2023. Predict

Nano-FTIR (6,281 words) [view diff] exact match in snippet view article find links to article

among others. Nano-FTIR has been used for investigation of protein secondary structure, bacterial membrane, detection and studies of single viruses

WD Repeat and Coiled Coil Containing Protein (3,105 words) [view diff] case mismatch in snippet view article find links to article

National Institute of Health. Retrieved 3 May 2020. "abi GOR IV Protein Secondary Structure Prediction Method". Rhone-Alpes Bioinformatic Pole Gerland Site

Fluorescent glucose biosensor (7,448 words) [view diff] exact match in snippet view article find links to article

D-galactose/D-glucose-binding protein from Escherichia coli restores the native protein secondary structure and thermostability that are lost upon calcium depletion. J Biochem

Hydrogen isotope biogeochemistry (30,904 words) [view diff] exact match in snippet view article find links to article

shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy". Biochemistry. 31 (6): 1647–1651. CiteSeerX 10