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searching for Scaffolding (bioinformatics) 39 found (43 total)

alternate case: scaffolding (bioinformatics)

Newbler (155 words) [view diff] no match in snippet view article find links to article

Sanger sequence data if appropriately formatted to aid in assembly and scaffolding. Sequencing Sequence assembly Genivaldo, GZ; Silva, Bas E; Dutilh, David;

BioRuby (503 words) [view diff] no match in snippet view article find links to article

of setting up directory/file scaffolding, a git repository and releasing online package databases. Open Bioinformatics Foundation BioPerl BioPython BioJava

Hybrid genome assembly (2,951 words) [view diff] no match in snippet view article find links to article

In bioinformatics, hybrid genome assembly refers to utilizing various sequencing technologies to achieve the task of assembling a genome from fragmented

Phi X 174 (2,296 words) [view diff] no match in snippet view article find links to article

incorporation, can be overcome when excess amounts of protein B, the internal scaffolding protein, are supplied.[citation needed] The DNA is ejected through a

Duplodnaviria (2,662 words) [view diff] no match in snippet view article find links to article

the geometric construction of the capsid. In the absence of separate scaffolding proteins, the delta domain of HK97 MCP, which faces toward the inside

Protein (11,206 words) [view diff] no match in snippet view article find links to article

muscle and the proteins in the cytoskeleton, which form a system of scaffolding that maintains cell shape. Other proteins are important in cell signaling

Alan Christoffels (2,658 words) [view diff] no match in snippet view article find links to article

bioinformatics scientist, academic, and an author. He is Professor of Bioinformatics, and the director of the South African National Bioinformatics Institute

Protein–protein interaction (8,396 words) [view diff] no match in snippet view article find links to article

requires denaturation of the complex. Several enzymes, carrier proteins, scaffolding proteins, and transcriptional regulatory factors carry out their functions

Human genome (10,151 words) [view diff] no match in snippet view article find links to article

gene-regulatory elements, DNA playing structural and replicatory roles, such as scaffolding regions, telomeres, centromeres, and origins of replication, plus large

Laminin (3,428 words) [view diff] no match in snippet view article find links to article

cells to the basement membrane. Laminins are integral to the structural scaffolding of almost every tissue of an organism—secreted and incorporated into

Genome sequencing of endangered species (2,267 words) [view diff] no match in snippet view article find links to article

Walter (2011-02-15). "Scaffolding pre-assembled contigs using SSPACE". Bioinformatics. 27 (4): 578–579. doi:10.1093/bioinformatics/btq683. ISSN 1367-4811

CASS4 (3,332 words) [view diff] no match in snippet view article find links to article

Cas scaffolding protein family member 4 is a protein that in humans is encoded by the CASS4 gene. CASS4 (Crk associated substrate 4) is the fourth and

Protein tertiary structure (1,603 words) [view diff] no match in snippet view article find links to article

J (2006). "Molecular gymnastics: serpiginous structure, folding and scaffolding". Current Opinion in Structural Biology. 16 (6): 761–68. doi:10.1016/j

List of RNA-Seq bioinformatics tools (20,371 words) [view diff] no match in snippet view article find links to article

next-generation sequencing technologies. This technique is largely dependent on bioinformatics tools developed to support the different steps of the process. Here

Coiled coil (3,860 words) [view diff] no match in snippet view article find links to article

from regular bundles to peculiar twists". Bioinformatics. 36 (22–23): 5368–5376. doi:10.1093/bioinformatics/btaa1041. ISSN 1367-4803. PMC 8016460. PMID 33325494

Metabolism (12,380 words) [view diff] no match in snippet view article find links to article

mechanical functions, such as those that form the cytoskeleton, a system of scaffolding that maintains the cell shape. Proteins are also important in cell signaling

TMEM69 (685 words) [view diff] no match in snippet view article find links to article

the scientific community. It is, however, thought to play a role as a scaffolding protein in a G-coupled protein receptor complex in Xenopus tropicalis

Complete Genomics (1,403 words) [view diff] no match in snippet view article find links to article

combinatorial process of DNA barcoding. It enables phasing, SV detection, scaffolding, and cost-effective diploid de novo genome assembly from second-generation

Jumping library (2,917 words) [view diff] no match in snippet view article find links to article

library can be used with NGS for the mapping of structural variation and scaffolding of de novo assemblies. Jumping libraries can be categorized according

Friendly artificial intelligence (2,710 words) [view diff] no match in snippet view article find links to article

present-day, unextrapolated humanity. Steve Omohundro has proposed a "scaffolding" approach to AI safety, in which one provably safe AI generation helps

Protein design (7,649 words) [view diff] no match in snippet view article find links to article

problems using linear and integer programming". Bioinformatics. 21 (7): 1028–36. doi:10.1093/bioinformatics/bti144. PMID 15546935. Yanover, Chen; Talya Meltzer;

MAP3K1 (3,167 words) [view diff] no match in snippet view article find links to article

PMID 17529967. "Q13233 (M3K1_HUMAN)". Swiss Model. Swiss Institute of Bioinformatics. Yan M, Dai T, Deak JC, Kyriakis JM, Zon LI, Woodgett JR, Templeton

G protein-coupled receptor (9,384 words) [view diff] no match in snippet view article find links to article

increase the affinity of the intracellular surface for the binding of scaffolding proteins called β-arrestins (β-arr). Once bound, β-arrestins both sterically

Optical mapping (2,102 words) [view diff] no match in snippet view article find links to article

Nagarajan, N., et al. "Scaffolding and validation of bacterial genome assemblies using optical restriction maps." Bioinformatics 24.10 (2008):1229–35.

Wnt signaling pathway (7,427 words) [view diff] no match in snippet view article find links to article

gateway molecule pages--a data model perspective". Bioinformatics. 27 (12): 1736–8. doi:10.1093/bioinformatics/btr190. PMC 3106186. PMID 21505029. Wnt+Proteins

Arithmetic (16,445 words) [view diff] no match in snippet view article find links to article

"Techniques for Designing Bioinformatics Algorithms". Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics. Elsevier. ISBN 978-0-12-811432-2

Ancient protein (7,903 words) [view diff] no match in snippet view article find links to article

collagen fibres, forming a matrix. Despite extensive research, bone scaffolding is still a challenge, and the role of non-collagenous proteins (a wide

HOXA11-AS1 (2,050 words) [view diff] no match in snippet view article find links to article

"LncRNA HOXA11-AS Promotes Proliferation and Invasion of Gastric Cancer by Scaffolding the Chromatin Modification Factors PRC2, LSD1, and DNMT1". Cancer Research

Hepatocyte growth factor receptor (6,925 words) [view diff] no match in snippet view article find links to article

subunit of phosphatidylinositol-3 kinase (PI3K), or indirectly through the scaffolding protein Gab1 Tyr 1349 and Tyr 1356 of the multisubstrate docking site

Jay Clark Brown (2,359 words) [view diff] no match in snippet view article find links to article

capsid proteins, including VP5 as the major capsid protein, VP22a as a scaffolding protein and VP19c and VP23 as triplex proteins. In related research,

Structural equation modeling (10,148 words) [view diff] no match in snippet view article find links to article

and coefficient estimation, and hence deserve acknowledgment as the scaffolding supporting the estimates and their interpretation. Interpretations become

CRISPR (16,350 words) [view diff] no match in snippet view article find links to article

bridges two Cas1 dimers. In this complex Cas2 performs a non-enzymatic scaffolding role, binding double-stranded fragments of invading DNA, while Cas1 binds

List of sequenced plant genomes (10,505 words) [view diff] no match in snippet view article find links to article

php/Sequenced_plant_genomes https://phytozome.jgi.doe.gov/pz/portal.html https://bioinformatics.psb.ugent.be/plaza/ Yu J, Li L, Wang S, Dong S, Chen Z, Patel N, Goffinet

Child development (21,844 words) [view diff] no match in snippet view article find links to article

development) could help children learn new tasks. This technique, called "scaffolding," builds new knowledge onto the knowledge children already have to help

Ribosomally synthesized and post-translationally modified peptides (6,154 words) [view diff] no match in snippet view article find links to article

in leader peptide recognition and binding and is sometimes called a scaffolding protein. The D protein is an ATP-dependent cyclodehydratase that catalyzes

Applications of artificial intelligence (20,753 words) [view diff] no match in snippet view article find links to article

Frank; Correia, Bruno; Ovchinnikov, Sergey; Baker, David (22 July 2022). "Scaffolding protein functional sites using deep learning". Science. 377 (6604): 387–394

Alternative abiogenesis scenarios (9,029 words) [view diff] no match in snippet view article find links to article

droplets was shown to be preserved within the droplets. The droplets have scaffolding ability, by allowing lipids to assemble around them; this may have prevented

Timeline of biotechnology (24,288 words) [view diff] no match in snippet view article find links to article

Frank; Correia, Bruno; Ovchinnikov, Sergey; Baker, David (22 July 2022). "Scaffolding protein functional sites using deep learning" (PDF). Science. 377 (6604):

CSNK1D (14,738 words) [view diff] no match in snippet view article find links to article

its cellular function. This sequestration is usually facilitated by scaffolding proteins, which are also supposed to allosterically control the activity